Yeah, it may just work itself out. Or you can just actively work with the smaller [the instigator haha] and make it so that he knows it's not ok to pick fights with his furry family members.
When I first brought another dog into the house, they did not get along. I gave it a few weeks to resolved itself [with my fingers crossed and to trying to emit positive energy the entire time] but I knew that if they didn't resolve their issues, I would have to find a new home for the last edition because it as my other do home first.
But now they are inseparable, plus we've added another ^_^
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