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I am not familiar with litter training rabbits but I do know they do 2 different types of poop - one which they eat again, and it is essential for them to do this as it is part of the digestive process and it is possible for a rabbit to become malnourished if it is cleaned out too rigorously denying the eating of these.
I would guess this would have impact on litter training them as if the tray was emptied straight after use the rabbit would consider it loosing essential food.
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